Available implementations#

This page references smart-microscopy implementations for different manufacturers and academic labs. We highly encourage community contributions, contact us or add your entry via the GitHub repository!

Academic implementations#

Industry implementations#

Hardware / Software compatibility#

These tables provide a more general overview, also linking to projectes not yet represented in the working group. An overview of relevant software can also be found here: https://smartmicroscopy.org/resources/

Hardware compatibility matrix#

Brand

Internal scripting support

Interoperable external software

API

Open source compatibility

Examples provided

Licence free of charge

Acquifer IM

Medium

Prescreen - rescreen

Evident (formely Olympus)

Medium

Inscoper

High

Leica

Low

Viventis

Medium

Luxendo

Medium

Nikon

Medium

openUC2

High

Zeiss

Medium

OAD TCP-IP interface

PicoQuant MicroTime 200

High (via TCP/IP)

✓ (not public)

RAPP OptoElectronic

High

Software compatibility matrix#

Software

License

GUI / Coding

Compatible hardware

Repo

Publication

Zeiss Zen OAD

Commercial

API

Zeiss LM microscopes

zeiss-microscopy/OAD

Nikon NIS-Elements Jobs module / macro language

Commercial

GUI and API

Nikon microscopes

Leica LAS-X

Commercial

GUI

Leica microscopes

Inscoper

Commercial

GUI and API

Devices supported by Inscoper

SymPhoTime64

Commercial

API

PicoQuant MicroTime200

Cytely

Commercial

GUI

Nikon: full support, other devices: partial support

link

Evident (formely Olympus) Macro to Micro

Commercial

GUI

Evident microscopes operated by cellSens

Evident (formely Olympus) RMTDK

Commercial

API

Evident Point scanning confocals

RAPP OptoElectronic - SysCon

Commercial

API

RAPP photomanipulation devices

AutoMicTools package

Open source

GUI and API

Several commercial microscope brands (e.g. Zeiss, Olympus/Evident, Nikon)

https://git.embl.de/halavaty/AutoMicTools

https://git.embl.de/grp-almf/zeiss_zenblue_automation/

https://git.embl.de/grp-almf/automictools-fluoview-bridge

pymmcore-plus

Open source

API

μManager devices & custom devices

pymmcore-gui

Open source

GUI

GUI for pymmcore-plus backend

pymmcore-plus/pymmcore-gui

pymmcore-widgets

Open source

GUI

GUI for pymmcore-plus backend

pymmcore-plus/pymmcore-widgets

napari-micromanager

Open source

GUI

GUI for pymmcore-plus backend

pymmcore-plus/napari-micromanager

pymmcore-eda

Open source

API

Dynamic acquisitions using pymmcore-plus backend

LEB-EPFL/pymmcore-eda

link

rtm-pymmcore

Open source

API

Adaptive photomanipulation using pymmcore-plus backend

pertzlab/rtm-pymmcore

Navigate

Open source

GUI and API

μManager devices and custom devices

link

ImSwitch

Open source

GUI and API

μManager devices, wide range of devices via python, openUC2

openuc2/ImSwitch

link

Pycro-Manager

Open source

API

μManager devices & custom devices

micro-manager/pycro-manager

link

AutoPilot

Open source

API

Custom built

MicroscopeAutoPilot/autopilot

link

AutoScanJ

Open source

API

Leica LAS AF/X and μManager devices

link

MicroMator

Open source

GUI and API

μManager devices

Gitlab

link

CyberSco.Py

Open source

GUI and API

XCite LED and Andor camera

Lab513/CyberSco.Py

link

Microscopy Pipeline Constructor (MyPiC)

Open source

API

Zeiss LSM780 / LSM880

manerotoni/mypic

link

Adaptive Feedback Microscopy ImageJ/FiJi utilities

Open source

API

Enabling adaptive feedback microscopy with MyPiC backend

https://git.embl.org/grp-ellenberg/adaptive_feedback_mic_fiji

link