Available implementations#
This page references smart-microscopy implementations for different manufacturers and academic labs. We highly encourage community contributions, contact us or add your entry via the GitHub repository!
Academic implementations#
Project overview |
Repo |
Institution |
Contact |
---|---|---|---|
Modular adaptive feedback microscopy workflows with AutoMicTools |
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CelFDrive: Multimodal AI-Assisted Microscopy for Detection of Rare Events |
Industry implementations#
Product overview |
Repo |
Brand |
Contact |
---|---|---|---|
Hardware / Software compatibility#
These tables provide a more general overview, also linking to projectes not yet represented in the working group. An overview of relevant software can also be found here: https://smartmicroscopy.org/resources/
Hardware compatibility matrix#
Brand |
Internal scripting support |
Interoperable external software |
API |
Open source compatibility |
Examples provided |
Licence free of charge |
---|---|---|---|---|---|---|
Acquifer IM |
✓ |
✓ |
✓ |
Medium |
✓ |
|
Evident (formely Olympus) |
✓ |
✓ |
✓ |
Medium |
✓ |
✕ |
Inscoper |
✕ |
✓ |
✓ |
High |
✓ |
✕ |
Leica |
✓ |
✕ |
✕ |
Low |
✕ |
✕ |
Viventis |
✕ |
✓ |
✓ |
Medium |
✓ |
✓ |
Luxendo |
✕ |
✓ |
✕ |
Medium |
✓ |
✓ |
Nikon |
✓ |
✓ |
✕ |
Medium |
✓ |
✕ |
openUC2 |
✓ |
✓ |
✓ |
High |
✓ |
✓ |
Zeiss |
✓ |
✓ |
✓ |
Medium |
✕ |
|
PicoQuant MicroTime 200 |
✓ |
✓ |
✕ |
High (via TCP/IP) |
✓ (not public) |
✕ |
RAPP OptoElectronic |
✕ |
✓ |
✓ |
High |
✕ |
✕ |
Software compatibility matrix#
Software |
License |
GUI / Coding |
Compatible hardware |
Repo |
Publication |
---|---|---|---|---|---|
Commercial |
API |
Zeiss LM microscopes |
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Nikon NIS-Elements Jobs module / macro language |
Commercial |
GUI and API |
Nikon microscopes |
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Leica LAS-X |
Commercial |
GUI |
Leica microscopes |
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Inscoper |
Commercial |
GUI and API |
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Commercial |
API |
PicoQuant MicroTime200 |
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Commercial |
GUI |
Nikon: full support, other devices: partial support |
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Evident (formely Olympus) Macro to Micro |
Commercial |
GUI |
Evident microscopes operated by cellSens |
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Evident (formely Olympus) RMTDK |
Commercial |
API |
Evident Point scanning confocals |
||
RAPP OptoElectronic - SysCon |
Commercial |
API |
RAPP photomanipulation devices |
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Open source |
GUI and API |
Several commercial microscope brands (e.g. Zeiss, Olympus/Evident, Nikon) |
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Open source |
API |
μManager devices & custom devices |
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Open source |
GUI |
GUI for pymmcore-plus backend |
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Open source |
GUI |
GUI for pymmcore-plus backend |
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Open source |
GUI |
GUI for pymmcore-plus backend |
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Open source |
API |
Dynamic acquisitions using pymmcore-plus backend |
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Open source |
API |
Adaptive photomanipulation using pymmcore-plus backend |
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Open source |
GUI and API |
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Open source |
GUI and API |
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Open source |
API |
μManager devices & custom devices |
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Open source |
API |
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Open source |
API |
Leica LAS AF/X and μManager devices |
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Open source |
GUI and API |
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Open source |
GUI and API |
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Open source |
API |
Zeiss LSM780 / LSM880 |
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Open source |
API |
Enabling adaptive feedback microscopy with MyPiC backend |
https://git.embl.org/grp-ellenberg/adaptive_feedback_mic_fiji |